From: Metabolic models predict bacterial passengers in colorectal cancer
Basal environment | Model subset | Score | Max W | CRC enrich. p value (null 1) | CRC enrich. p value (null 2) | Mann-Whitney U statistic | Mann-Whitney p value | Adj. p value# |
---|---|---|---|---|---|---|---|---|
MAMBO | All | MI | 0.2813 | 1.00E−04 | 1.00E−04 | 109720.5 | 1.79E−08 | 6.90E−08 |
 | SGA | 0.2620 | 1.00E−04 | 1.00E−04 | 103113 | 2.20E−05 | 4.57E−05 | |
 | MR | 0.3255 | 1.00E−04 | 1.00E−04 | 107855.5 | 1.14E−07 | 3.85E−07 | |
Gut | MI | 0.3995 | 1.00E−04 | 1.00E−04 | 10156 | 2.09E−05 | 4.57E−05 | |
 | SGA | 0.3330 | 1.00E−04 | 1.00E−04 | 8694 | 1.98E−02 | 2.97E−02 | |
 | MR | 0.4258 | 2.00E−04 | 1.00E−04 | 9491 | 5.28E−04 | 1.02E−03 | |
AGORA | MI | 0.4302 | 1.00E−04 | 1.00E−04 | 43996 | 1.53E−15 | 1.38E−14 | |
 | SGA | 0.3446 | 1.00E−04 | 1.00E−04 | 38949 | 1.61E−07 | 4.83E−07 | |
 | MR | 0.4423 | 1.00E−04 | 1.00E−04 | 42642 | 2.51E−13 | 1.69E−12 | |
Western diet | All | MI | 0.3193 | 1.00E−04 | 1.00E−04 | 113411.5 | 1.44E−10 | 6.48E−10 |
SGA | 0.1035 | 9.16E−02 | 9.74E−02 | 86876.5 | 2.73E−01 | 2.73E−01 | ||
MR | 0.1327 | 2.17E−02 | 1.94E−02 | 91885 | 3.82E−02 | 5.16E−02 | ||
Gut | MI | 0.4713 | 1.00E−04 | 1.00E−04 | 10493 | 2.57E−06 | 6.31E−06 | |
SGA | 0.2607 | 1.36E−02 | 1.59E−02 | 8417.5 | 4.27E−02 | 5.49E−02 | ||
MR | 0.3544 | 5.00E−04 | 3.00E−04 | 9265.5 | 9.35E−04 | 1.68E−03 | ||
AGORA | MI | 0.4231 | 1.00E−04 | 1.00E−04 | 44395.5 | 2.82E−16 | 3.81E−15 | |
SGA | 0.1744 | 8.80E−03 | 8.70E−03 | 31390.5 | 1.16E−01 | 1.36E−01 | ||
MR | 0.2412 | 1.00E−04 | 1.00E−04 | 34690.5 | 1.01E−03 | 1.70E−03 | ||
High-fiber diet | All | MI | 0.3179 | 1.00E−04 | 1.00E−04 | 113424 | 1.41E−10 | 6.48E−10 |
SGA | 0.1117 | 6.62E−02 | 6.56E−02 | 86914 | 2.66E−01 | 2.73E−01 | ||
MR | 0.1274 | 5.90E−02 | 2.91E−02 | 91129 | 4.77E−02 | 5.85E−02 | ||
Gut | MI | 0.4713 | 1.00E−04 | 1.00E−04 | 10495 | 2.53E−06 | 6.31E−06 | |
SGA | 0.2273 | 3.93E−02 | 3.78E−02 | 7782 | 1.98E−01 | 2.14E−01 | ||
MR | 0.2831 | 7.70E−03 | 7.10E−03 | 8384 | 3.10E−02 | 4.41E−02 | ||
AGORA | MI | 0.4197 | 1.00E−04 | 1.00E−04 | 44399.5 | 2.77E−16 | 3.81E−15 | |
SGA | 0.1641 | 1.69E−02 | 1.71E−02 | 30795 | 1.88E−01 | 2.12E−01 | ||
MR | 0.2102 | 1.50E−03 | 1.90E−03 | 33887.5 | 3.59E−03 | 5.70E−03 |