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Table 3 Enrichment for CRC bacteria in different basal environments and model subsets

From: Metabolic models predict bacterial passengers in colorectal cancer

Basal environment

Model subset

Score

Max W

CRC enrich.

p value

(null 1)

CRC enrich.

p value

(null 2)

Mann-Whitney

U statistic

Mann-Whitney

p value

Adj. p value#

MAMBO

All

MI

0.2813

1.00E−04

1.00E−04

109720.5

1.79E−08

6.90E−08

 

SGA

0.2620

1.00E−04

1.00E−04

103113

2.20E−05

4.57E−05

 

MR

0.3255

1.00E−04

1.00E−04

107855.5

1.14E−07

3.85E−07

Gut

MI

0.3995

1.00E−04

1.00E−04

10156

2.09E−05

4.57E−05

 

SGA

0.3330

1.00E−04

1.00E−04

8694

1.98E−02

2.97E−02

 

MR

0.4258

2.00E−04

1.00E−04

9491

5.28E−04

1.02E−03

AGORA

MI

0.4302

1.00E−04

1.00E−04

43996

1.53E−15

1.38E−14

 

SGA

0.3446

1.00E−04

1.00E−04

38949

1.61E−07

4.83E−07

 

MR

0.4423

1.00E−04

1.00E−04

42642

2.51E−13

1.69E−12

Western diet

All

MI

0.3193

1.00E−04

1.00E−04

113411.5

1.44E−10

6.48E−10

SGA

0.1035

9.16E−02

9.74E−02

86876.5

2.73E−01

2.73E−01

MR

0.1327

2.17E−02

1.94E−02

91885

3.82E−02

5.16E−02

Gut

MI

0.4713

1.00E−04

1.00E−04

10493

2.57E−06

6.31E−06

SGA

0.2607

1.36E−02

1.59E−02

8417.5

4.27E−02

5.49E−02

MR

0.3544

5.00E−04

3.00E−04

9265.5

9.35E−04

1.68E−03

AGORA

MI

0.4231

1.00E−04

1.00E−04

44395.5

2.82E−16

3.81E−15

SGA

0.1744

8.80E−03

8.70E−03

31390.5

1.16E−01

1.36E−01

MR

0.2412

1.00E−04

1.00E−04

34690.5

1.01E−03

1.70E−03

High-fiber diet

All

MI

0.3179

1.00E−04

1.00E−04

113424

1.41E−10

6.48E−10

SGA

0.1117

6.62E−02

6.56E−02

86914

2.66E−01

2.73E−01

MR

0.1274

5.90E−02

2.91E−02

91129

4.77E−02

5.85E−02

Gut

MI

0.4713

1.00E−04

1.00E−04

10495

2.53E−06

6.31E−06

SGA

0.2273

3.93E−02

3.78E−02

7782

1.98E−01

2.14E−01

MR

0.2831

7.70E−03

7.10E−03

8384

3.10E−02

4.41E−02

AGORA

MI

0.4197

1.00E−04

1.00E−04

44399.5

2.77E−16

3.81E−15

SGA

0.1641

1.69E−02

1.71E−02

30795

1.88E−01

2.12E−01

MR

0.2102

1.50E−03

1.90E−03

33887.5

3.59E−03

5.70E−03

  1. #adjusted p values <0.05 were considered significant