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Table 3 Enrichment for CRC bacteria in different basal environments and model subsets

From: Metabolic models predict bacterial passengers in colorectal cancer

Basal environmentModel subsetScoreMax WCRC enrich.
p value
(null 1)
CRC enrich.
p value
(null 2)
Mann-Whitney
U statistic
Mann-Whitney
p value
Adj. p value#
MAMBOAllMI0.28131.00E−041.00E−04109720.51.79E−086.90E−08
 SGA0.26201.00E−041.00E−041031132.20E−054.57E−05
 MR0.32551.00E−041.00E−04107855.51.14E−073.85E−07
GutMI0.39951.00E−041.00E−04101562.09E−054.57E−05
 SGA0.33301.00E−041.00E−0486941.98E−022.97E−02
 MR0.42582.00E−041.00E−0494915.28E−041.02E−03
AGORAMI0.43021.00E−041.00E−04439961.53E−151.38E−14
 SGA0.34461.00E−041.00E−04389491.61E−074.83E−07
 MR0.44231.00E−041.00E−04426422.51E−131.69E−12
Western dietAllMI0.31931.00E−041.00E−04113411.51.44E−106.48E−10
SGA0.10359.16E−029.74E−0286876.52.73E−012.73E−01
MR0.13272.17E−021.94E−02918853.82E−025.16E−02
GutMI0.47131.00E−041.00E−04104932.57E−066.31E−06
SGA0.26071.36E−021.59E−028417.54.27E−025.49E−02
MR0.35445.00E−043.00E−049265.59.35E−041.68E−03
AGORAMI0.42311.00E−041.00E−0444395.52.82E−163.81E−15
SGA0.17448.80E−038.70E−0331390.51.16E−011.36E−01
MR0.24121.00E−041.00E−0434690.51.01E−031.70E−03
High-fiber dietAllMI0.31791.00E−041.00E−041134241.41E−106.48E−10
SGA0.11176.62E−026.56E−02869142.66E−012.73E−01
MR0.12745.90E−022.91E−02911294.77E−025.85E−02
GutMI0.47131.00E−041.00E−04104952.53E−066.31E−06
SGA0.22733.93E−023.78E−0277821.98E−012.14E−01
MR0.28317.70E−037.10E−0383843.10E−024.41E−02
AGORAMI0.41971.00E−041.00E−0444399.52.77E−163.81E−15
SGA0.16411.69E−021.71E−02307951.88E−012.12E−01
MR0.21021.50E−031.90E−0333887.53.59E−035.70E−03
  1. #adjusted p values <0.05 were considered significant