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Table 2 SNP associations of discriminant metabolites with p < 8.79 × 10−9

From: mGWAS identification of six novel single nucleotide polymorphism loci with strong correlation to gastric cancer

Metabolites

SNP

Chr

Pos

Alt

Ref

p value

R2

Candidate gene

Function

Dihydrobiopterin

rs140991639

2

226294958

A

G

6.62E−09

7.23%

NYAP2

Intron, Enh60914

Platelet-activating factor

rs12208390

6

26437106

T

C

1.69E−09

8.10%

BTN3A3,BTN2A3P

Upstream

rs3927423

6

26393487

T

C

2.73E−09

7.93%

BTN2A2

UTR-3

rs6912853

6

26401438

T

C

3.80E−09

7.82%

BTN3A1

Upstream

rs140044870

4

150707364

A

C

5.88E−09

7.62%

DCLK2

Upstream, Enh90264

rs12204145

6

26600156

A

G

7.73E−09

7.51%

ABT1

UTR-3

rs957788

13

108257220

C

T

8.66E−09

7.51%

FAM155A

Intron

Cer(d18:0/12:0)

rs1183416

13

44873710

T

C

1.10E−09

8.46%

SERP2

Upstream, Enh30302

 

rs295977

5

58893286

A

C

1.70E−09

8.28%

PDE4D

Intron, Enh55272

  1. SNP, single nucleotide polymorphism; Chr, chromosome; Pos, position; Alt, alternative allele; Ref, reference allele